UPPMAX packages

Note

What about the packages you suggested/requested in your registration?

Packages included in the python/3.9.5 module

  • Jupyter Notebook

  • matplotlib

  • networkx

  • numpy

  • Pandas

  • Graphviz/0.16

  • scipy

Packages that can be loaded with ‘module load’

  • module load bioinfo-tools biopython

    • biopython

  • module load python_ML_packages

    • sklearn/scikit-learn

    • TensorFlow

    • torch

    • mpi

    • mpi4py

  • module load bwa

  • module load Graphviz/2.40.1

  • module load HiChipper

  • module load Homer

  • module load pysam

Packages not centrally installed at the moment

  • adjustText

  • DeepLabCut

  • ete3

  • Google Colab

  • KiwiDist

  • rpack

  • Rdkit

  • plink

  • puma

  • Pygraphviz/1.9

  • pyspark

  • ScanPy

  • venndiagram (venn/matplotlib-venn)

  • vtk/vtkmodules